PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00442.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 232aa    MW: 27146.5 Da    PI: 8.5504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00442.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.51.3e-2391322128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              + GfrFhPtd+el+ +yLk+ + ++ l+  ++ik  +++ +++Pw++      +ek +yf s+  + +++ kr +r++ +g+Wka+
  Sme2.5_00442.1_g00006.1   9 TLGFRFHPTDKELI-NYLKNFMLHEILPPIDFIKVKEVFgDSQPWQII----DGEKTCYFLSRLTRFKNSTKRFSRTVGAGTWKAK 89 
                              67************.9*********98887889988766268*****6....467899**************************** PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+k++ +   k+ ++g k++L +   + +k ++ +W+m+ey l
  Sme2.5_00442.1_g00006.1  90 AKSKSISDGsrKNVTIGYKRSLRYE-SDVEKEQNGKWLMKEYFL 132
                              ******997556667********97.56666699********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-246154IPR003441NAC domain
PROSITE profilePS5100527.3568154IPR003441NAC domain
PfamPF023658.9E-1711131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSSSKSKLTL GFRFHPTDKE LINYLKNFML HEILPPIDFI KVKEVFGDSQ PWQIIDGEKT  60
CYFLSRLTRF KNSTKRFSRT VGAGTWKAKA KSKSISDGSR KNVTIGYKRS LRYESDVEKE  120
QNGKWLMKEY FLPEEYVKRS RYKDIFVICR IKQKKQKEDA DYKEVTEEEV DEVINNLSGN  180
NDQSTSTLNN NVQHEYYGAL NIEADNNYLV GGEVEQFNGI NPYENYSFDN FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549492.16e-69PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016549495.18e-69PREDICTED: NAC domain-containing protein 78-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-18NAC family protein